Indonesian
J
our
nal
of
Electrical
Engineering
and
Computer
Science
V
ol.
42,
No.
1,
April
2026,
pp.
194
∼
204
ISSN:
2502-4752,
DOI:
10.11591/ijeecs.v42.i1.pp194-204
❒
194
A
graph
neural
netw
ork
framew
ork
f
or
v
ascular
str
eak
dieback
r
ecognition
Slamin
1
,
Rizk
y
Alfanio
Atmok
o
1
,
Antonius
Cah
ya
Prihandok
o
1
,
Muhammad
Ariful
Fur
qon
1
,
Qurr
ota
A
’yuni
Ar
Ruhimat
1
,
Annisa
Fitri
Maghir
oh
Har
vyanti
1
,
Bayu
T
aruna
W
idjaja
Putra
1
,
Roslan
Hasni
2
1
Department
of
Computer
Science,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
,
Jember
,
Indonesia
2
F
aculty
of
Computer
Science
and
Mathematics,
Uni
v
ersiti
Malaysia
T
erengg
anu,
K
uala
Nerus
T
erengg
anu,
Malaysia
Article
Inf
o
Article
history:
Recei
v
ed
Dec
15,
2025
Re
vised
Jan
31,
2026
Accepted
Mar
4,
2026
K
eyw
ords:
Agricultural
image
analysis
Cocoa
leaf
disease
Graph
neural
netw
ork
Hybrid
CNN–GNN
V
ascular
streak
dieback
ABSTRA
CT
V
ascular
streak
dieback
(VSD)
is
one
of
the
most
destructi
v
e
diseases
af
fecting
cocoa
production
in
Southeast
Asia,
including
Indonesia,
where
early
visual
symptoms
are
often
subtle
and
spatially
distrib
uted
across
the
leaf
sur
-
f
ace.
Con
v
entional
image-based
disease
recognition
approaches,
particularly
those
relying
solely
on
con
v
olutional
neural
netw
orks
(CNNs),
are
ef
fecti
v
e
in
e
xtracting
local
visual
features
b
ut
remain
limited
in
modeling
long-range
structural
relationships
such
as
v
enation
disruption
and
lesion
spread.
T
o
ad-
dress
this
limitation,
this
study
in
v
estig
ates
a
h
ybrid
CNN-graph
neural
netw
ork
(CNN-GNN)
frame
w
ork
for
automated
VSD
recognition
from
cocoa
leaf
im-
ages.
A
primary
dataset
consisting
of
1,000
RGB
images
collected
directly
from
cocoa
plantations
in
Jember
Re
genc
y
w
as
used
to
reect
realistic
eld
condi-
tions.
In
the
proposed
approach,
CNNs
are
emplo
yed
for
local
feature
e
xtraction,
while
graph-based
representations
enable
GNNs
to
capture
global
relational
pat-
terns
through
message
passing.
Experimental
results
demonstrate
stable
learning
beha
vior
and
strong
classication
performance,
achie
ving
a
maximum
v
alidation
accurac
y
of
95.2%
and
an
area
under
the
curv
e
(A
UC)
of
approximately
0.94.
Further
analysis
sho
ws
balanced
precision
and
recall
across
classes,
indicating
reliable
discrimination
between
Sehat
and
VSD-infected
lea
v
es.
These
ndings
suggest
that
h
ybrid
CNN-GNN
modeling
pro
vides
an
ef
fecti
v
e
strate
gy
for
cap-
turing
both
local
and
distrib
uted
structural
characteristics
of
VSD
symptoms
and
highlights
the
potential
of
graph-based
reasoning
to
complement
con
v
olutional
feature
learning
in
plant
disease
diagnostics.
This
is
an
open
access
article
under
the
CC
BY
-SA
license
.
Corresponding
A
uthor:
Slamin
Department
of
Computer
Science,
F
aculty
of
Computer
Science
Uni
v
ersity
of
Jember
,
Jember
,
Indonesia
Email:
slamin@unej.ac.id
1.
INTR
ODUCTION
Cocoa
is
an
essential
product
for
f
armers
throughout
Indonesia,
including
those
in
Jember
.
Ho
we
v
er
,
this
does
not
mean
that
cocoa
f
arming
is
without
its
challenges.
Indonesia,
on
the
other
hand,
is
considered
geographically
suitable
for
cocoa
culti
v
ation,
b
ut
geograph
y
alone
does
not
determine
the
success
of
cocoa
culti
v
ation.
One
cause
of
cocoa
crop
f
ailure
is
fung
al
disease,
one
of
which
is
v
ascular
streak
dieback
(VSD),
caused
by
Ceratobasidium
theobromae,
and
is
considered
a
serious
threat
[1].
VSD
in
cocoa
causes
anatomical
and
ph
ysiological
symptoms
that,
if
left
untreated,
will
lead
to
decreased
yields
and
will
af
fect
the
long-term
results
of
cocoa
plantations.
When
production
decreases
b
ut
demand
remains
constant
or
increases,
this
will
J
ournal
homepage:
http://ijeecs.iaescor
e
.com
Evaluation Warning : The document was created with Spire.PDF for Python.
Indonesian
J
Elec
Eng
&
Comp
Sci
ISSN:
2502-4752
❒
195
cause
cocoa
prices
to
rise
[2].
Se
v
eral
studies,
such
as
those
from
[2],
sho
w
that
cases
of
VSD
in
cocoa
sho
w
a
pattern
of
increasing
in
Southeast
Asia,
including
Indonesia.
Based
on
[3],
Indonesia
itself
is
one
of
the
countries
that
produces
cocoa
and
e
xports
cocoa
in
signicant
quantities,
which
is
supported
by
the
latest
report
from
BPS
[4].
Cocoa
diseases
can
be
visually
recognized,
one
of
which
is
from
the
color
of
the
lea
v
es.
This
is
supported
by
research
results
from
[1],
[2],
[5],
which
stated
that
there
are
color
changes
in
the
lea
v
es
of
cocoa
plants
e
xperiencing
VSD
disease
symptoms.
Con
v
olutional
n
e
ural
netw
orks
(CNNs)
ha
v
e
been
widely
used
in
plant
disease
recognition
due
to
t
heir
ability
to
e
xtract
local
te
xture
and
color
features
from
leaf
imagery
[6].
Pre
vious
researches
such
as
Mohanty
et
al.
[7]
sho
wed
that
deep
CNNs
could
classify
plant
diseases
from
RGB
images,
meanwhile
T
oo
et
al
.
[8]
com-
pared
multiple
transfer
learning
architectures
for
agricultural
applications,
achie
ving
signicant
classication
accurac
y
impro
v
ements.
More
recently
,
K
ou
a
ssi
et
al.
[9]
applied
CNNs
detecting
diseases
of
cocoa
leaf,
where
CNN-based
feature
e
xtraction
combined
with
XGBoost
classication
yielded
reliable
results.
Ho
we
v
er
,
CNNs
persist
limitation
in
modeling
long-range
spatial
dependencies
and
structural
relationships
acros
s
dif
ferent
leaf
re
gions.
T
o
o
v
ercome
these
constraints,
researchers
ha
v
e
e
xplored
graph
neural
netw
orks
(GNNs),
which
model
e
xplicitly
relational
structures
and
interactions
among
image
re
gions
[10]-[17].
F
or
e
xample,
Zhao
et
al.
[18]
recommended
a
structural
graph
learning
frame
w
ork
for
image
classication,
P
ark
et
al.
[19]
were
utilizing
graph
instruments
to
goal
about
visual
relationships,
and
W
u
et
al.
[20]
established
adapti
v
e
graph
con
v
o-
lutional
netw
orks
for
ne-grained
visual
recognition.
Although
these
GNN-based
models
ef
fecti
v
ely
capture
spatial
dependencies,
the
y
often
lack
comprehensi
v
e
visual
conte
xt
compared
to
CNNs.
Accordingly
,
recent
studies
inte
grated
both
paradigms
through
CNN-GNN
h
ybrid
architectures
[21]-[26],
combination
of
CNN’
s
strength
in
local
feature
e
xtraction
and
GNN’
s
capacity
for
relational
reasoning
to
achie
v
e
better
performance
in
comple
x
image
classication
assignments
such
as
detecting
plant
disease.
The
moti
v
ation
for
this
study
is
also
rooted
in
our
earlier
w
ork
on
agri-graph
neural
netw
ork
(Agri-
GNN),
which
le
v
eraged
graph-structured
learning
to
capture
spatial
and
relational
dependencies
in
agricultural
prediction
tasks,
outperforming
con
v
entional
deep
learning
approaches
for
rice
yield
forecasting
in
Indonesia
[27]-[30].
In
this
study
,
we
collected
primary
data
from
1,250
cocoa
leaf
photos
collected
in
Jember
Re
genc
y
.
Pre
vious
research
related
to
cocoa
disease
diagnosis
includes
e
xpert
system–based
approaches
such
as
[31];
ho
we
v
er
,
to
the
best
of
our
understanding,
there
has
been
no
study
that
specically
applies
machine
learning
methods
to
VSD
disease
in
cocoa.
Therefore,
the
research
g
ap,
most
research
on
cocoa
leaf
disease
detection
i
s
still
limited
to
pure
CNN
approaches
that
only
e
xtract
local
spatial
features
without
considering
the
relationships
between
leaf
areas
[32],
[33].
Meanwhile,
GNN-based
models
ha
v
e
sho
wn
the
ability
to
understand
relationships
between
nodes,
b
ut
are
unable
to
e
xtract
comple
x
visual
features
in
natural
leaf
images
as
f
ar
as
we
understand,
there
has
been
no
research
that
combines
these
tw
o
approaches
specically
for
detecting
VSD
disease
in
cocoa
lea
v
es.
Therefore,
this
study
proposes
a
h
ybrid
CNN-GNN
model
that
utilizes
CNN
as
a
local
feature
e
xtractor
and
GNN
as
a
relationship
modeler
between
leaf
areas
to
be
used
as
a
model
for
classifying
the
dataset
we
ha
v
e
collected.
This
approach
is
e
xpected
to
o
v
ercome
the
limitations
of
each
model
by
producing
a
more
comprehensi
v
e
spatial-relational
representation.
2.
METHOD
2.1.
Dataset
and
pr
epr
ocessing
The
1,250
cocoa
leaf
images
are
di
vided
into
tw
o
classes,
namely
Sehat
(health
y)
and
V
ascular
Str
eak
Diebac
k
(VSD)
.
The
structure
of
the
images
is
based
on
folders,
enabling
automatic
label
assignment
with
PyT
orchs
ImageFolder
tool.
All
images
were
resized
to
a
x
ed
resolution
of
224
×
224
pix
els
to
ensure
uniform
input
di
mensions.
Images
were
then
transformed
into
tensor
representations
by
normalizing
the
pix
el
v
alues
to
the
range
[0
,
1]
.
The
dataset
w
as
di
vided
into
training
v
alidation
and
test
sets
at
percentages
of
70%,
10%,
and
20%
respecti
v
ely
.
respecti
v
ely
ensuring
balanced
class
distrib
utions
across
all
splits.
A
batch
size
of
32
w
as
used
for
mini-
batch
data
loading.
Data
shuf
ing
w
as
enabled
for
the
training
set
to
enhance
generalization
performance
and
decrease
sampling
bias.
Our
research
o
w
is
sho
wn
in
Figure
1.
2.2.
CNN
backbone
ar
chitectur
e
The
core
feature
e
xtractor
w
as
a
lightweight
CNN.
Three
con
v
olutional
blocks
with
progres
si
v
ely
deeper
channels
32,
64,
and
128
mak
e
up
the
architecture.
Accordingly
,
the
rectied
linear
unit
(ReLU)
ac-
A
gr
aph
neur
al
network
fr
ame
work
for
vascular
str
eak
diebac
k
r
eco
gnition
(Slamin)
Evaluation Warning : The document was created with Spire.PDF for Python.
196
❒
ISSN:
2502-4752
ti
v
ation
function
comes
after
each
con
v
olutional
layer
spatial
do
wnsampling
using
max
pooling.
An
adapti
v
e
a
v
erage
pooling
layer
w
as
used
at
the
end
to
create
a
x
ed-length
netw
ork,
feature
representation
independent
of
the
spatial
dimensions
of
the
input.
An
output
with
128
dimensions
is
the
end
result,
each
feature
v
ector
acts
as
its
visual
embedding.
The
CNN
backbone
serv
es
tw
o
purposes
,
both
as
a
feature
encoder
in
the
CNN–GNN
model
and
as
a
standalone
classier
in
the
CNN-only
baseline.
Figure
1.
Ov
erall
research
o
w
illustrating
the
main
stages
of
the
study
2.3.
Graph
construction
A
graph
structure
w
as
dynamically
b
uilt
to
capture
relational
information
between
samples
in
e
v
ery
mini-batch.
P
airwise
cosine
similarity
w
as
calculated
between
e
v
ery
sample
batch
of
CNN
feature
embeddings.
The
top-
K
most
similar
samples
were
chosen
as
neighbors
for
each
node,
in
this
case
study
K
=
5
is
used.
An
undirected
graph
w
as
formed
by
creati
ng
edges
in
both
directions,
and
the
resulting
structure
w
as
represented
using
the
edge-inde
x
format
needed
for
graph
neural
netw
orks.
During
training,
relational
reasoning
between
visually
comparable
samples
is
made
possible
by
this
batch-wise
graph
b
uilding,
which
preserv
es
computing
ef
cienc
y
.
2.4.
Graph
neural
netw
ork
module
A
tw
o-layer
graph
con
v
olutional
netw
ork
(GCN)
w
as
used
to
create
the
graph-based
reasoning
com-
ponent.
A
ReLU
acti
v
ation
function
comes
after
the
rst
graph
con
v
olution
layer
,
which
con
v
erts
the
128-
dimensional
CNN
features
into
a
256-dimensional
hidden
representation.
The
hidden
representation
is
pro-
jected
into
the
output
space
that
corresponds
to
the
number
of
tar
get
classes
by
the
second
layer
.
The
model
may
update
feature
representations
based
on
int
er
-sample
correlations
and
aggre
g
ate
data
from
neighboring
nodes
by
using
graph
con
v
olution
processes.
2.5.
T
raining
strategy
The
CNN-only
and
CNN-GNN
models
were
trained
for
20
epochs
at
a
learning
rate
of
1
×
10
−
3
using
the
Adam
optimizer
.
The
training
tar
get
w
as
the
cross-entrop
y
loss
function.
Backpropag
ation
w
as
used
to
tune
the
model’
s
parameters,
and
generalization
performance
w
as
e
v
aluated
by
tracking
v
alidation
accurac
y
.
Due
to
hardw
are
limitations,
e
v
ery
e
xperiment
w
as
carried
out
in
a
CPU-based
setting.
The
suggested
training
conguration
is
still
appropriate
for
assessing
the
ef
fecti
v
eness
of
the
suggested
strate
gy
e
v
en
in
the
absence
of
GPU
acceleration.
2.6.
Ev
aluation
metrics
Se
v
eral
metrics,
including
o
v
erall
accurac
y
,
precision,
recall,
and
F1-score
for
each
class,
were
used
to
e
v
aluate
the
model’
s
performance.
Additionally
,
class-wise
prediction
errors
were
analyzed
using
confusion
matrices.
The
models’
ability
to
discriminate
across
v
arious
cate
gorization
thresholds
w
as
e
v
aluated
using
recei
v
er
operating
characteristic
(R
OC)
curv
es
and
the
associated
area
under
the
curv
e
(A
UC).
3.
RESUL
TS
AND
DISCUSSION
3.1.
Ov
erall
perf
ormance
of
the
CNN-GNN
model
The
learning
beha
vior
remained
stable
throughout
the
training
process,
with
both
training
accurac
y
and
v
alidation
accurac
y
sho
wing
meaningful
impro
v
ements
when
observ
ed
across
each
epoch
as
presented
in
the
training
v
ersus
v
alidation
curv
es.
The
maximum
v
alidat
ion
accurac
y
achie
v
ed
by
the
model
reached
95.2%
as
sho
wn
in
Figure
2.
This
result
can
be
used
as
a
basis
to
state
that
the
generalization
capability
is
considered
good,
e
v
en
though
the
training
w
as
conducted
in
a
CPU-based
en
vironment.
It
can
be
observ
ed
that
the
training
accurac
y
and
v
alidation
accurac
y
e
xhibit
relati
v
ely
similar
rising
and
f
alling
patterns.
The
results
also
sho
w
that
the
dif
ference
between
the
tw
o
v
alues
remains
relati
v
ely
small
Indonesian
J
Elec
Eng
&
Comp
Sci,
V
ol.
42,
No.
1,
April
2026:
194–204
Evaluation Warning : The document was created with Spire.PDF for Python.
Indonesian
J
Elec
Eng
&
Comp
Sci
ISSN:
2502-4752
❒
197
for
each
epoch,
indicating
that
no
signicant
o
v
ertting
occurs.
This
suggests
that
the
combination
of
con
v
olu-
tional
feature
e
xtraction
and
graph-based
reasoning
is
able
to
learn
meaningful
representations
from
cocoa
leaf
images.
Figure
2.
T
raining
and
v
alidation
accurac
y
curv
es
of
the
CNN–GNN
model
o
v
er
20
epochs
3.2.
P
er
-class
e
v
aluation
and
err
or
analysis
Per
-class
metric
e
v
aluation
w
as
conducted
to
analyze
the
classication
beha
vior
of
the
CNN-GNN
model
in
greater
detail.
The
e
v
aluation
results
sho
w
that
the
precision,
recall,
and
F1-score
v
alues
are
relati
v
ely
balanced
for
both
classes.
The
complete
results
are
presented
as
follo
ws
T
able
1.
These
results
indicate
that
the
model
is
ef
fecti
v
e
in
detecting
infected
lea
v
es
while
simultaneously
maintaining
a
lo
w
f
alse-positi
v
e
error
rate.
T
able
1.
Classication
performance
metrics
Class
Precision
Recall
F1-score
Support
Sebat
0.94
0.95
0.95
64
VSD
0.95
0.93
0.94
61
Accurac
y
0.94
125
Macro
A
vg
0.94
0.94
0.94
125
W
eighted
A
vg
0.94
0.94
0.94
125
The
confusion
matrix
is
sho
wn
in
Figure
3.
More
detailed
information
is
pro
vided
by
the
confusion
matrix
related
to
classicat
ion
errors.
From
the
confusion
matrix,
it
can
be
stated
that
the
classication
is
correct
for
most
samples
and
only
a
small
number
of
f
alse
ne
g
ati
v
es
are
observ
ed.
This
conte
xt
is
important
in
cocoa
leaf
disease
detection,
because
if
an
infection
occurs
b
ut
is
not
detected,
it
may
result
in
signicant
agricultural
production
losses.
3.3.
Discriminati
v
e
capability
analysis
In
Figure
4,
which
represents
the
R
OC
curv
e
of
the
CNN-GNN
model,
it
is
sho
wn
that
approxima
tely
0.94
is
the
A
UC
v
alue
of
the
model.
Based
on
t
his,
the
discriminati
v
e
capability
is
considered
suf
ciently
strong
in
performing
classication
of
cocoa
lea
v
es
“Sehat”
and
those
infected
with
VSD
across
v
arious
classication
thresholds.
The
high
A
UC
v
alue
indicates
that
the
learned
feature
representations
are
ef
fecti
v
e
in
separating
the
tw
o
classes,
e
v
en
when
the
decision
threshold
is
adjusted.
This
further
conrms
the
rob
ustness
of
the
proposed
approach.
A
gr
aph
neur
al
network
fr
ame
work
for
vascular
str
eak
diebac
k
r
eco
gnition
(Slamin)
Evaluation Warning : The document was created with Spire.PDF for Python.
198
❒
ISSN:
2502-4752
Figure
3.
Confusion
matrix
of
the
CNN–GNN
model
on
the
v
alidation
dataset
Figure
4.
R
OC
curv
e
of
the
CNN-GNN
model
with
an
A
UC
v
alue
of
approximately
0.94
3.4.
Ablation
study:
CNN
vs.
CNN-GNN
An
ablation
study
w
as
conducted
to
e
v
aluate
the
contrib
ution
of
the
graph-based
reasoni
n
g
component.
A
comparison
between
the
CNN-only
model
as
a
baseline
and
the
CNN-GNN
model
is
sho
wn
in
Figure
5.
In
this
section,
it
is
interesting
to
observ
e
that
the
CNN-only
model
achie
v
ed
a
maximum
v
alidation
accurac
y
of
97.6%,
which
is
higher
than
the
95.2%
maximum
v
alidation
accurac
y
obtained
by
the
CNN-GNN
model.
This
result
suggests
that,
for
the
dataset
used,
visual
features
alone
are
already
highly
discriminati
v
e,
such
that
additional
relational
modeling
through
graph
structures
does
not
al
w
ays
lead
to
performance
impro
v
ement.
Such
results
may
be
inuenced
by
se
v
eral
f
actors,
including
the
possibilit
y
t
h
a
t
con
v
olut
ional
features
are
suf
cient
to
separate
the
visual
characteristics
of
Sehat
cocoa
lea
v
es
and
those
infected
with
VSD.
In
addition,
the
ability
of
the
GNN
to
model
global
relationships
among
samples
may
be
constrained
by
the
batch-wise
graph
construction
strate
gy
.
Interestingly
,
the
C
NN-only
model
achie
v
ed
a
slightly
higher
maximum
v
alidation
accurac
y
(97.6%)
compared
to
the
CNN-GNN
model
(95.2%).
These
ndings
indicate
that,
for
the
dataset
used,
visual
features
alone
are
highly
discriminati
v
e,
and
thus
additional
relational
modeling
via
graph
structures
does
not
necessar
-
Indonesian
J
Elec
Eng
&
Comp
Sci,
V
ol.
42,
No.
1,
April
2026:
194–204
Evaluation Warning : The document was created with Spire.PDF for Python.
Indonesian
J
Elec
Eng
&
Comp
Sci
ISSN:
2502-4752
❒
199
ily
enhance
performance.
Another
possible
f
actor
is
that
the
relati
v
ely
moderate
dataset
size
may
reduce
the
ef
fecti
v
eness
of
graph-based
learning,
as
relational
reasoning
generally
pro
vides
greater
benets
for
lar
ger
or
more
ambiguous
datasets.
Ne
v
ertheless,
these
ndings
do
not
diminish
the
rele
v
ance
of
the
CNN-GNN
approach.
Instead,
the
results
emphasize
that
graph-based
reasoning
is
most
benecial
when
inter
-sample
relationships
pro
vide
com-
plementary
information
be
yond
visual
cues.
Therefore,
this
ablation
study
of
fers
important
insights
into
the
conditions
under
which
graph-enhanced
models
can
operate
optimally
.
Figure
5.
Ablation
study
comparing
the
v
alidation
accurac
y
of
the
CNN-only
and
CNN-GNN
models
4.
CONCLUSION
The
study
tests
a
h
ybrid
frame
w
ork
using
CNN
and
GNN
to
classify
cocoa
leaf
diseases,
focusing
on
distinguishing
health
y
lea
v
es
from
VSD-af
fected
ones.
A
CNN
feature
embedding-based
k-nearest
neighbor
graph
represents
sample
connections
in
the
proposed
approach,
which
combines
feature
e
xtraction
with
graph-
based
relational
reasoning.
The
e
xperiments
sho
w
that
the
CNN-GNN
model
performs
reliably
with
v
alidation
accurac
y
o
v
er
95%,
balanced
precision
and
recall
across
classes,
and
high
R
OC-A
UC,
CNN
had
slightly
higher
maximum
v
alidation
accurac
y
than
the
baseline
CNN
model
in
an
ablation
study
.
This
indicat
es
that
visual
features
alone
are
highly
ef
fecti
v
e
at
distinguishing
cate
gories
in
the
dataset,
making
graph-bas
ed
reasoning
unnecessary
for
cons
istent
performance
impro
v
ements.
These
ndings
emphasize
the
importance
of
empirical
assessment
and
ablation
analysis
in
determining
architectural
element
impact.
This
study
illuminates
graph-
based
deep
learning
model
rele
v
ance
in
agricultural
imagery
.
Graph-based
reasoning
uses
sample
relationships,
b
ut
its
ef
fecti
v
eness
depends
on
the
dataset’
s
characteristics,
graph
construction
methods,
and
data
size.
W
e
will
in
v
estig
ate
global
graph
constructi
on
methods,
alternati
v
e
similarity
metrics,
and
lar
ger
,
more
di
v
erse
datasets
to
better
understand
when
CNN-GNN
models
outperform
con
v
olutional
methods.
A
CKNO
WLEDGEMENT
This
re
search
w
as
supported
by
the
Uni
v
ersitas
Jember
under
an
international
collaboration
schem
e
with
Uni
v
ersiti
Malaysia
T
erengg
anu,
Malaysia.
The
authors
e
xpress
their
gratitude
to
Uni
v
ersiti
Malaysia
T
erengg
anu
for
pro
v
i
ding
graph
theory
e
xpertise
that
signicantly
contrib
uted
to
the
success
of
this
interna-
tional
research
project.
FUNDING
INFORMA
TION
This
research
w
as
funded
by
the
Uni
v
ersitas
Jember
under
an
international
collaboration
research
grant
scheme
numbered
2956/UN25.3.1/L
T/25
A
gr
aph
neur
al
network
fr
ame
work
for
vascular
str
eak
diebac
k
r
eco
gnition
(Slamin)
Evaluation Warning : The document was created with Spire.PDF for Python.
200
❒
ISSN:
2502-4752
A
UTHOR
CONTRIB
UTIONS
ST
A
TEMENT
This
journal
uses
the
Cont
rib
utor
Roles
T
axonomy
(CRediT)
to
recognize
indi
vidual
author
contrib
u-
tions,
reduce
authorship
disputes,
and
f
acilitate
collaboration.
Name
of
A
uthor
C
M
So
V
a
F
o
I
R
D
O
E
V
i
Su
P
Fu
Slamin
✓
✓
✓
✓
✓
Rizk
y
Alf
anio
Atmok
o
✓
✓
✓
✓
✓
Antonius
Cah
ya
Prihandok
o
✓
✓
✓
✓
✓
Muhammad
Ariful
Furqon
✓
✓
✓
✓
✓
Qurrota
A
’yuni
Ar
Ruhimat
✓
✓
✓
✓
✓
Annisa
Fitri
Maghiroh
Harvyanti
✓
✓
✓
✓
✓
Bayu
T
aruna
W
idjaja
Putra
✓
✓
✓
✓
✓
Roslan
Hasni
✓
✓
✓
✓
✓
C
:
C
onceptualization
I
:
I
n
v
estig
ation
V
i
:
V
i
sualization
M
:
M
ethodology
R
:
R
esources
Su
:
Su
pervision
So
:
So
ftw
are
D
:
D
ata
Curation
P
:
P
roject
administration
V
a
:
V
a
lidation
O
:
Writing
-
O
riginal
Draft
Fu
:
Fu
nding
acquisition
F
o
:
F
o
rmal
analysis
E
:
Writing
-
Re
vie
w
&
E
diting
CONFLICT
OF
INTEREST
ST
A
TEMENT
Each
of
the
authors
of
this
research
declare
no
conict
of
interest.
D
A
T
A
A
V
AILABILITY
The
data
of
this
study
has
been
collected
directly
by
the
authors
in
the
cocoa
plantations
in
Jember
,
Indonesia.
The
authors
ha
v
e
recorded
directly
the
visual
appearance
of
cocoa
lea
v
es
on
a
cocoa
plant
and
replaced
the
background
display
with
white
by
co
v
ering
the
background
with
perfect
white
paper
and
then
sa
ving
it
as
image
data
of
1,250
cocoa
leaf
displays
with
white
background
image.
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R.
A.
Atmok
o,
S.
Slamin,
A.
C.
Prihandok
o,
M.
A.
Furqon,
Q.
A.
Ar
Ruhimat,
and
B.
T
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W
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Putra,
“Indonesia
rice
yields
forecasting
using
Agri-Graph
neural
net
w
ork,
”
in
Proc.
9th
Int.
Conf.
Man-Machine
Systems
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,
2025,
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10.1109/ICoMMS66553.2025.11200184.
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A.
Gupta
and
A.
Singh,
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Agri-GNN:
A
no
v
el
genotypic-topological
graph
neural
netw
ork
frame
w
ork
b
uilt
on
GraphSA
GE
for
optimized
yield
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”
arXi
v:2310.13037,
2023.
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v
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g/abs/2310.13037
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K.
W
ang
et
al.,
“Maize
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prediction
with
trait-missing
data
via
bipartite
graph
neural
netw
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Plant
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2024,
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F
.
Y
ang
et
al.,
“Prediction
of
corn
v
ariety
yield
with
attrib
ute-missing
data
via
graph
neural
netw
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Electron.
Agric.
,
2023.
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A.
Franz,
N.
Nurlaila,
and
P
.
Y
.
Andayani,
“Expert
system
for
diagnosing
cocoa
diseases
using
the
Demp-
ster–Shafer
method,
”
Politeknik
Pertanian
Ne
geri
Samarinda
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v
ol.
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no.
1,
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.
2020.
[Online].
A
v
ailabl
e:
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ps://e-
journal.politanisamarinda.ac.id/inde
x.php/tepian/article/vie
w/49/33
[32]
K.
Hu,
G.
Coleman,
S.
Zeng,
Z.
W
ang,
and
M.
W
alsh,
“Graph
W
eeds
Net:
A
graph-based
deep
learning
method
for
weed
recogni-
tion,
”
Comput.
Electron.
Agric.
,
v
ol.
174,
Art.
no.
105520,
2020,
doi:
10.1016/j.compag.2020.105520.
[33]
R
.
A.
Meshram
and
A.
S.
Alvi,
“Design
of
an
iterati
v
e
method
for
crop
disease
analysis
incorporating
graph
attention
with
spatial-tempora
l
learning
and
deep
Q-netw
orks,
”
Int.
J.
Intell.
Eng.
Syst.
,
v
ol.
17,
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706–718,
2024,
doi:
10.22266/ijies2024.0630.55.
BIOGRAPHIES
OF
A
UTHORS
Pr
of
.
Drs.
Slamin,
M.Comp.Sc.,
Ph.D
.
is
a
Professor
of
Computer
Science
at
the
Depart-
ment
of
Informatics,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
,
Indonesia.
He
recei
v
ed
his
Drs.
de
gree
from
the
Uni
v
ersity
of
Jember
in
1991,
the
M.Comp.Sc.
de
gree
from
the
Uni
v
ers
ity
of
Ne
wcastle,
Australia,
in
1998,
and
the
Ph.D.
de
gree
from
the
same
uni
v
ersity
in
2002.
His
research
interests
include
graph
theory
,
graph
labeling,
combinatorics,
cryptograph
y
,
machine
learning,
net-
w
ork
optimization,
and
computational
intelligence.
He
has
taught
a
wide
range
of
courses,
includ-
ing
discrete
mathematics,
graph
theory
,
professional
issues,
decision
support
systems,
and
adv
anced
courses
in
informatics
and
information
systems.
He
has
been
ac
ti
v
ely
in
v
olv
ed
in
numerous
national
and
international
research
grants,
particularly
in
graph
theory
applications,
c
ybersecurity
,
cryptog-
raph
y
,
graph
neural
netw
orks,
smart
f
arming,
optimization,
and
netw
ork
modeling.
Throughout
his
career
,
he
has
published
e
xtensi
v
ely
in
reputable
international
journals
such
as
SOIC,
Opuscula
Math-
ematica,
EJGT
A,
Symmetry
,
Heliyon,
APJIS,
IJ
AERS,
and
Kraguje
v
ac
Journal
of
Mathematics.
He
has
also
contrib
uted
to
international
conferences
and
collaborati
v
e
research
projects,
including
stud-
ies
on
antimagic
labeling,
metric
dimension,
dominating
sets,
and
netw
ork
optimization.
He
has
authored
books,
including
T
eori
Gr
af
dan
Aplikasinya
,
and
has
secured
multiple
cop
yrights
related
to
graph
theory
and
optimization
systems.
He
has
also
serv
ed
as
a
speak
er
,
re
vie
wer
,
and
collaborator
in
v
arious
scientic
forums.
He
can
be
contacted
at
email:
slamin@unej.ac.id.
A
gr
aph
neur
al
network
fr
ame
work
for
vascular
str
eak
diebac
k
r
eco
gnition
(Slamin)
Evaluation Warning : The document was created with Spire.PDF for Python.
202
❒
ISSN:
2502-4752
Pr
of
.
Drs.
Antonius
Cah
ya
Prihandok
o,
M.A
pp.Sc.,
Ph.D
.
is
a
Professor
of
Computer
Science
at
the
Department
of
Informatics,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
,
In-
donesia.
He
recei
v
ed
the
Drs.
de
gree
from
the
Uni
v
ersity
of
Jember
in
1992,
the
M.App.Sc.
de
gree
from
James
Cook
Uni
v
ersity
,
Australia,
in
1999,
and
the
Ph.D.
de
gree
from
the
s
ame
uni
v
ersity
in
2015.
His
academic
e
xpertise
includes
cryptograph
y
,
graph
theory
,
graph
labeling,
netw
ork
optimiza-
tion,
information
security
,
and
mathematical
modeling.
He
teaches
a
broad
range
of
under
graduate
and
postgraduate
courses,
including
Modern
Cryptograph
y
,
Information
Systems
Security
Manage-
ment,
Ethics
and
Professional
Issues,
Research
Methodology
,
Algebra,
and
Basic
Mathematics.
He
has
be
en
acti
v
ely
in
v
olv
ed
in
numerous
national
and
international
research
grants
focusing
on
an-
timagic
labeling,
asymmetric
cryptograph
y
,
graph
neural
netw
orks,
smart
f
arming
technologies,
net-
w
ork
topology
optimization,
and
machine
learning–based
security
systems.
e
has
published
widely
in
reputable
journals
such
as
IJECE,
Indonesian
Journal
of
Combinatorics,
IJCNIS,
Internati
onal
Jour
-
nal
on
Adv
anced
Science,
Engineering
and
Informati
on
T
echnology
,
Journal
of
Ph
ysics:
Conference
Series,
and
se
v
eral
mathematics
and
information
systems
journals
.
His
scholarly
contrib
utions
also
include
research
on
stream
cipher
construction,
rainbo
w
antimagic
coloring,
DRM
systems,
learning
models,
and
optimization
for
netw
ork
infrastructure.
He
has
also
serv
ed
as
a
principal
in
v
estig
a-
tor
and
collaborator
in
v
arious
international
research
program
s,
particularly
i
n
biometric
encryption,
transportation
netw
ork
analysis,
and
c
yber
resilience.
His
academic
output
includes
arti
cles,
con-
ference
proceedings,
and
a
book
chapter
on
group
and
ring
theory
.
He
can
be
contacted
at
email:
antoniuscp.ilk
om@unej.ac.id.
Rizk
y
Alfanio
Atmok
o,
S.Si.,
M.Sc.
is
a
lecturer
at
the
Department
of
Informatics,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
.
He
recei
v
ed
the
S.Si.
de
gree
from
Uni
v
ersitas
Gadjah
Mada
in
2016
and
the
M.Sc.
de
gree
from
the
same
uni
v
ersity
in
2019.
His
research
interests
include
quantum
computing,
graph
databases,
kno
wledge
graphs,
spatial
data
analysis,
cryptogra-
ph
y
,
and
computational
modeling.
He
teaches
se
v
eral
under
graduate
courses
such
as
line
ar
algebra,
statistics,
programming
languages,
theory
of
automata,
graph
databases,
kno
wledge
graphs,
modern
cryptograph
y
,
basic
mathematics,
geographic
information
systems,
and
introductory
GIS.
His
aca-
demic
contrib
utions
also
i
nclude
the
de
v
elopment
of
graph-based
learning
module
s
and
the
inte
gra-
tion
of
quantum
information
conce
pts
into
computational
frame
w
orks.
Rizk
y
has
published
research
in
national
journals
and
conference
proceedings,
including
w
orks
on
quantum-state
encryption,
spa-
tial
tuberculosis-case
mapping,
and
agricultural
forecast
ing
using
graph
neural
netw
orks
(GNN).
His
publication
record
includes
contrib
utions
to
the
International
J
ournal
of
Multidisciplinary
Sciences
and
Art
s
,
J-TIT
,
REMik
,
and
IEEE
conferences.
He
has
been
acti
v
e
in
community
service
acti
vi-
ties,
such
as
serving
as
the
lead
trainer
for
the
Informatics
National
Science
Olympiad
preparation
at
SMAN
2
Jember
(2024).
He
also
holds
a
re
gistered
cop
yright
for
the
academic
information
system
F
asilk
omP
artner
s
.
He
can
be
contacted
at
email:
izk
yaatmok
o@unej.ac.id.
Muhammad
‘
Ariful
Fur
qon,
S.Pd.,
M.K
om.
is
an
Assistant
Professor
at
the
Department
of
Informatics,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
,
Indonesia.
He
earned
his
S.Pd.
de
gree
from
Uni
v
ersitas
Ne
geri
Malang
in
2016
and
the
M.K
om.
de
gree
from
Instit
ut
T
eknologi
Sepuluh
Nopember
(ITS)
in
2019.
His
research
interests
include
articial
intelligence,
deep
learning,
g
ame
de
v
elopment,
graph
databases,
kno
wledge
graphs,
machine
learning
for
agriculture,
and
intel-
ligent
systems.
He
teaches
se
v
eral
courses,
including
statistics,
graph
databases,
kno
wledge
graphs,
articial
intelligence,
g
ame
design
and
de
v
elopment,
g
ame
intelligence,
g
ame
engine
design,
and
research
methodology
.
His
academic
acti
vities
al
so
encompass
the
de
v
elopment
of
intelligent
sys-
tems
for
agriculture,
computational
modeling,
and
educational
technology
.
He
has
been
in
v
olv
ed
in
numerous
research
projects,
including
Deep
Kno
wledge
Graphs
for
rice
pest
and
disease
diagnosis,
machine-learning–based
food
security
predi
ction,
and
optimization
in
agroindustry
supply
chains.
He
has
serv
ed
as
principal
in
v
estig
ator
in
se
v
eral
grants
such
as
K
eRis–DiMas
and
Dosen
Pemula
programs.
He
acti
v
ely
contrib
utes
to
community
service,
focusing
on
digital
literac
y
,
SDGs
village
de
v
elopment,
ICT
-based
citizen
services,
and
the
implementation
of
virtual
laboratory
media
for
impro
ving
higher
-order
thinking
skills.
His
publications
include
articles
in
national
journals,
interna-
tional
journals,
and
proceedings
on
topics
such
as
image
se
gmentation,
data
visualization,
kno
wledge
graph
modeling,
intelli
gent
assistants,
and
ICT
for
agriculture.
He
also
holds
multiple
intellectual
property
rights,
including
eXperT
ani
1.0,
Deep
Kno
wledge
Graph
for
rice
pests
and
diseases,
and
se
v
eral
ICT
-based
educational
tools.
He
can
be
contacted
at
email:
ariful.furqon@unej.ac.id.
Indonesian
J
Elec
Eng
&
Comp
Sci,
V
ol.
42,
No.
1,
April
2026:
194–204
Evaluation Warning : The document was created with Spire.PDF for Python.
Indonesian
J
Elec
Eng
&
Comp
Sci
ISSN:
2502-4752
❒
203
Qurr
ota
A
’yuni
Ar
Ruhimat,
S.Pd.,
M.Sc.
is
a
lecturer
at
the
Department
of
Infor
-
matics,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
,
Indonesia.
She
recei
v
ed
her
Bachelor
of
Education
de
gree
from
the
Uni
v
ersity
of
Jember
in
2013
and
her
Master
of
Science
de
gree
from
Uni
v
ersitas
Gadjah
Mada
in
2016.
Her
academic
and
res
earch
interests
include
applied
mathematics,
optimization,
data
science,
data
visualization,
operational
research,
and
netw
ork
topology
modeling.
She
teaches
courses
such
as
statistics,
basic
mathematics,
data
science,
data
visualization,
operational
research,
and
research
methodology
.
Her
research
acti
vities
co
v
er
netw
ork
optimization,
genetic
al-
gorithms,
smart
tourism
digitalization,
website
security
,
and
mathematical
optimization
for
public
health
and
nutrition
programs.
She
has
been
acti
v
ely
in
v
olv
ed
in
nationally
funded
research,
includ-
ing
optical
distrib
ution
point
optimization
using
genetic
algorithms,
access
point
topology
modeling
for
smart
tourism,
and
simple
x-based
optimi
zation
for
nutritional
balance
analysis.
She
has
also
contrib
uted
to
community
service
programs
focusing
on
mathematics
education,
social
media
ana-
lytics
for
SMEs,
web-based
school
systems,
augmented
reality
learning
media,
and
rural
economic
empo
werment.
Her
scholarly
w
orks
include
publi
cations
in
journals
and
conference
proceedings
on
netw
ork
topology
,
OSPF-based
IoT
monitoring
systems,
and
TSP-based
optimization.
She
holds
a
re
gistered
c
op
yright
for
educational
material
in
computational
intelligence.
She
can
be
contacted
at
email:
qurrotaaar@unej.ac.id.
Annisa
Fitri
Maghr
oh
Har
vyanti,
S.Si.,
M.Si.
is
a
lecturer
at
the
Department
of
Infor
-
matics,
F
aculty
of
Computer
Science,
Uni
v
ersity
of
Jember
,
Indonesia.
She
obtained
her
Bachelor
of
Science
de
gree
in
Mathematics
from
Uni
v
ersitas
Gadjah
Mada
in
2020
and
her
Master
of
Science
de
gree
in
Mathematics
from
Uni
v
ersitas
Jember
in
2024.
Her
academic
interests
include
applied
mathematics,
mathematical
modeling,
machine
learning,
computer
vi
sion,
and
data
science,
with
a
particular
emphasis
on
de
v
eloping
optimization-dri
v
en
machine
learning
models.
She
teaches
se
v
eral
courses
i
n
informatics,
including
Image
processing,
computer
vision,
articial
intelligence,
model-
ing
and
simulation,
ba
sic
mathematics
,
statistics,
and
linear
algebra.
Her
academic
e
xperience
also
includes
serving
as
a
lecturer
at
Politeknik
Ne
geri
Jember
,
a
research
assistant
in
precision
agricul-
ture,
and
a
teaching
assistant
in
computational
mathematics.
Her
research
portfolio
spans
AI-based
agricultural
diagnostics,
Y
OLO-based
disease
detection,
con
v
olutional
neural
netw
orks
for
cocoa
leaf
disease
recognition,
and
multilingual
sentiment
analysis
using
BER
T
.
She
has
been
in
v
olv
ed
in
projects
inte
grating
dominating
set
theory
with
deep
learning
models,
bridging
theoretical
mathe-
matics
and
computational
intelligence.
Be
yond
academics,
she
has
w
ork
ed
as
a
tutor
and
subject
e
xpert
for
se
v
eral
national
EdT
ech
platforms,
including
Zenius,
Snapquiz,
Qanda,
and
OLC
Edukasi.
She
has
also
been
acti
v
e
in
community
service
programs
as
a
v
olunteer
educator
and
humanitar
-
ian
w
ork
er
.
Her
broader
interests
include
science
communication,
digital
learning,
and
data-dri
v
en
inno
v
ation.
She
can
be
contacted
at
email:
annisafmh@unej.ac.id.
Pr
of
.
Bayu
T
aru
na
W
idjaja
Putra,
Ph.D
.
is
a
Full
Professor
at
the
Department
of
Agricultural
Engineering,
F
aculty
of
Agricultural
T
echnology
,
Uni
v
ersity
of
Jember
,
Indonesia.
He
recei
v
ed
the
B.Agr
.T
ech
de
gree
from
the
Uni
v
ersity
of
Jember
in
2008,
the
M.Eng.
de
gree
in
Agri-
cultural
Systems
and
Engineering
from
the
Asian
Institute
of
T
echnology
(AIT),
Thailand,
in
2013,
and
the
Ph.D.
de
gree
in
the
same
eld
from
AIT
in
2017.
His
research
interests
include
precision
agriculture,
agricultural
machine
vision,
remote
sens
ing
for
agriculture
and
forestry
,
wireless
sensor
netw
orks
(WSN),
IoT
-based
monitoring,
sensor
standardization,
deep
learning,
and
machine
learn-
ing.
He
has
authored
numerous
high-impact
publications
in
Q1–Q3
international
journals,
including
Measur
ement
,
Information
Pr
ocessing
in
Agricultur
e
,
Pr
ecision
Agricultur
e
,
Data
in
Brief
,
F
or
est
Science
and
T
ec
hnolo
gy
,
Micr
opr
ocessor
s
and
Mi
cr
osystems
,
and
J
ournal
of
Biosyst
ems
Engineer
-
ing
.
His
research
outputs
include
pioneering
w
orks
on
lo
w-cost
sensi
ng
systems,
IoT
-based
h
ydro-
ponics
monitoring,
deep-learning–based
agricultural
disease
detection,
optical
sensing
for
plant
nu-
trients,
and
remote
sensing
algorithms
for
plantation
management.
He
is
also
an
acti
v
e
in
v
entor
with
multiple
patents
and
cop
yright
s
in
sensing
systems,
optical
calibration
apparatus,
chloroph
yll
mea-
surement
technologies,
and
precision
agriculture
softw
are
platforms.
His
w
ork
Agriino
Handheld
Nutrient
Sensing
System
and
SP
AD-CAM
has
been
wide
ly
recognized
nationally
.
He
is
the
founder
and
in
v
entor
at
Pr
ecision
Agriculture
Indonesia
Ltd.,
and
has
held
leadership
roles
including
Head
of
ITC
Serv
e
UNEJ,
Coordinator
of
Scientic
Publication
at
LP2M
UNEJ,
and
Head
of
the
Laboratory
of
Precision
Agriculture
and
Geoinformat
ics.
He
is
a
member
of
ISP
A,
IEEE
Computational
Intel-
ligence
Society
,
and
PER
TET
A.
His
a
w
ards
include
the
prestigious
KWEF–Japan
Best
Researcher
A
w
ard
(2019).
He
can
be
contacted
via
email:
bayu@unej.ac.id.
A
gr
aph
neur
al
network
fr
ame
work
for
vascular
str
eak
diebac
k
r
eco
gnition
(Slamin)
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